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Vorlesung

Titel: "Data Mining in der Bioinformatik" (Vorlesungsverzeichnis)

Dozent: Prof. Dr. Karsten Borgwardt, MPI für Intelligente Systeme, MPI für Entwicklungsbiologie und Eberhard Karls Universität Tübingen

Übungsgruppenleiter: folgt

Zeitlicher Umfang:

Prüfung: mündlich, 24.2-26.2.2014, in der Paul-Ehrlich-Straße 5

Raum: A 302, Sand 1

Anrechenbarkeit:

Voraussetzungen: Grundlegende Mathematikkenntnisse, ansonsten erfordert der Kurs keine Vorkenntnisse


Block Course

Title: "Data Mining in Bioinformatics" (University Calendar)

Lecturer: Prof. Dr. Karsten Borgwardt, MPI for Intelligent Systems, MPI for Developmental Biology and Eberhard Karls Universität Tübingen

Tutors: tba

Schedule:

Exam: oral, February 24-26, in Paul-Ehrlich-Straße 5

Lecture Hall: A 302, Sand 1

Credit Details:

Requirements: Basic university courses in higher mathematics

Content:

Feb 10 Classification: Nearest Neighbour, Naive Bayes, Decision Trees, Support Vector Machines
Feb 11 Clustering: K-means, Kernel k-means, Graph-based Clustering, DBScan?, Hierarchical Clustering
Feb 12 Feature Selection: Greedy Feature Selection, Selection Criteria, Submodularity
Feb 13 Text Mining: Numerical Representation of Text, Association Rule Mining, Transductive Classification
Feb 14 Graph Mining: Frequent Subgraph Mining
Feb 17 The Need for Data Mining in Bioinformatics I
Feb 18 The Need for Data Mining in Bioinformatics II
Feb 19 Clustering in Bioinformatics
Feb 20 Graph Mining for Chemoinformatics and Drug Discovery
Feb 21 Project Presentations (starting 10:00 am s.t.)

Presentations on Friday, February 21, 2014:

By 8:00 AM on Friday, February 21, 2014, please submit the following by email to your supervisor and Prof. Borgwardt:

Oral Exams on February 24, 25 and 26, 2014:

Name First Name Day Time
Brachvogel Hans-Philipp 24.02.2014 12:00:00
Regenbogen Bianca 25.02.2014 11:00:00
Schön Max Emil 25.02.2014 11:30:00
Gutekunst Mirjam 25.02.2014 12:00:00
Ross Elise 26.02.2014 10:30:00
Rauch Jens 26.02.2014 11:00:00
Altergott Andreas 26.02.2014 11:30:00
Lehnerer Sebastian 26.02.2014 12:00:00

News:

The lecture on Wednesday, February 12, starts one hour later than usual, at 11:00 AM.

The presentations on Friday, February 21, start at 10:00 AM (not 9:00 AM as stated on the project sheets).

If you prefer to have your oral exam in German, you must email Prof. Borgwardt by Wednesday, February 19. Otherwise the exam will be in English.

Thursday, February 20: Exam times were slightly updated - please see above.

Slides:

DIB14_1.pdf

DIB14_2.pdf

DIB14_3.pdf

DIB14_4.pdf

DIB14_5.pdf

DIB14_6_7.pdf

DIB14_8.pdf

DIB14_9.pdf